The Oat variant database contains approximately 350 million SNPs and 35 million InDels, from a collection of 564 Oat accessions. These variants were called based on PepsiCo OT3098 Oat v2 sequence and annotated using PepsiCo OT3098 Oat v2 annotation.

Searchable PepsiCo OT3098 Oat v2 annotation using Gene ID and position.

The BarleyVar database contains approximately 54 million SNPs and 3.6 million InDels. It is based on the legacy variant call results of 19 barley accessions, using Morex version 1 as the reference genome.

Exploration of present/absent variation across the Barley pangenome. The database was built from the barley pangenome graph (generated from PGGB and imported into Panache using Morex v3 as the backbone). Gene and genomic coordinate lookup is avaiable, as well as sorting by phylogeny and PAV status.

Barley genome browser of 76 Barley Accessions from the Barley pangenome project using JBrowse version 2. The genome browser includes Morex v1, v2, and v3 annotations, as well as variant tracks.

Tube map of the Lupin pangenome constructed from Minigraph-cactus and Sequence Tube Map of 7 different accessions.

Oat genome browser of 24 Oat Accessions from the Oat pangenome project using JBrowse version 2. The genome browser also includes OT3098 v2 assembly and annotations; with the genetic variant tracks containing approximately 350 million SNPs and 35 million InDels from a collection of 564 Oat accessions.